SNP Profiles of POUND 7 /B View Data

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_Input profile	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
1._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
2._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
3._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
4._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
5._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
6._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
7._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
8._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
9._POUND_7_/B	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
10._RUQ_24	_	_	AC	GG	CT	_	AA	CC	AA	CT	_	_	AA	_
11._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
12._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
13._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
14._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
15._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
16._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
17._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
18._GC-01-114-6-11	TT	CC	AC	GG	CT	GG	AA	CC	AA	CT	AG	GG	AA	CC
19._RUQ_24	AA	CC	AC	CC	AG	GG	AA	GG	AA	AG	AG	GG	AA	GG

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_Input profile	AA	CC	CT	GT	GG	AA	CC	CT	TT	GG	GG	TT	AC	CC
1._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
2._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
3._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
4._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
5._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
6._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
7._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
8._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
9._POUND_7_/B	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
10._RUQ_24	AA	CC	CT	GT	GG	AA	_	CT	_	GG	_	_	_	CC
11._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
12._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
13._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
14._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
15._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
16._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
17._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
18._GC-01-114-6-11	AA	CC	CT	GT	GG	AA	CC	CT	CC	GG	GG	TT	AC	CC
19._RUQ_24	_	CC	_	AC	GG	AA	GG	AG	_	CC	GG	AA	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
1._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
2._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
3._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
4._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
5._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
6._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
7._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
8._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
9._POUND_7_/B	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AA	X_X
10._RUQ_24	_	AG	_	CT	_	_	_	TT	_	_	TT	CC	AG	X_X
11._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
12._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
13._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
14._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
15._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
16._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
17._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
18._GC-01-114-6-11	CC	AG	CT	CT	GG	GG	TT	TT	TT	CC	TT	CC	AA	X_X
19._RUQ_24	_	AG	_	AG	CC	GG	_	AA	AA	GG	AA	GG	AA	X_X

Input profile: POUND_7_/B RUQ_24

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 1 > FP

Dapeng Zhang, 2016

2._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 4 > FP

Dapeng Zhang, 2016

3._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 11 > F

Dapeng Zhang, 2016

4._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 10 > F

Dapeng Zhang, 2016

5._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 13

Dapeng Zhang, 2016

6._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 9

Dapeng Zhang, 2016

7._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 3

Dapeng Zhang, 2016

8._POUND_7_/B

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1611 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._POUND_7_/B

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F407 T3

Dapeng Zhang, 2016

10._POUND_7_/B RUQ_24

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

12._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

13._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

14._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

15._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

16._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

17._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

18._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

19._POUND_7_/B RUQ_24

45.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484